My $.02 worth... If you have a "good tuner" near by (not just "a tuner") you're likely to get very similar bumps in HP and in smoothness. Many tuners just tune for 100% pulls, so be aware of what you're wanting and what they are providing. Where the AutoTuner differs and for me personally has helped achieve my goals is in the wider spectrum of performance. If you run the AutoTuner, I highly recommend you run a 6-gear map. I've been able to get the same bump in power, improved acceleration, smoothness, and improved fuel economy using a 6-gear map (one AFR table and one fuel table for each gear). You're not going to get all of that all at once from a custom tune, unless they do a custom 6-gear map and spend
quite a bit of time tuning (which could be done, but would take quite a bit of effort and $$). I also live at high elevation (very similar to you Humtek

) and I tend to ride anywhere from 5,000 to 10,000 elevation. So it is my belief that w/the AutoTuner, I'm getting quicker fueling adjustments due to changing conditions... I have no proof of this when compared to stock adjustment capability, but I'm confident it isn't slower, and likely (again, my own opinion) to be quicker (adjustments). The trick is to find the right AFRs for your AFR table(s) that suit your needs. That's where a little knowledge is helpful. If you don't like to mess w/that stuff, a "good tuner" would be more recommended. The other thing I like, is that if I change any other parameters on my bike later on (different exhaust, air filters, etc.) the AutoTuner compensates right away, where as w/out, I may need to get another Tune... and at that time, you've probably paid two times what an AutoTuner costs.
I personally have nothing against dyno tuning and do believe it is a great asset and tool to have. In fact, I've had a custom Tune done for this bike early on. And who doesn't like a good dyno pull to see what kind of number gets spit out